How to feed two checking accounts into one main account in QuickBooks Online
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I’m assuming from your question that you would like to set up multiple accounts and then connect it to your bank account in QuickBooks Online. You can do this by following these instructions:
Set up all the accounts properly
This is the most frequented method to set up a checking account with multiple associated accounts. You have to create a parent account and then set up the other accounts as sub-accounts. Go to the chart of accounts, and you should see different sections for parent accounts and sub-accounts. You can view specific transactions for each account using the reporting feature for each individual account.
Connect all your accounts to Online Banking
If you would like to download transactions to only one account, then connect it only to the parent account. In case you would prefer downloading transactions to your individual accounts, then connect it to your sub-accounts instead. Please note that you cannot connect both parent and sub-accounts to QuickBooks Online Banking.
Reconcile your account
You will simply need to reconcile your checking account (your parent account) since the sub-accounts automatically sync with it.
That’s about all you will need. Hope this helps.